Selaginella moellendorffii:

Several cDNA libraries were made by JGI from RNA isolated from mixed tissues, including roots, juvenile and adult plants, including 
stobili (reproductive tissue, but not gametophytes).  cDNA was directionally cloned into one of two vectors (pMVSPORT6 and pMCL-cDNA; 
Libraries:

	CAOP	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute	
	CAOS	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOT	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOU	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOW	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOX	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOY	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	CAOZ	mixed tissues; whole plants with roots and reproductive tissue DOE Joint Genome Institute
	SmGB	Selaginella moellendorffii - Genbank External Data	-

Vectors

	CAOP    pMCL200_cDNA
	CAOS    pMCL200_cDNA
	CAOT    pMCL200_cDNA
	CAOU    pMCL200_cDNA
	CAOW    pCMVSPORT6
	CAOX    pCMVSPORT6
	CAOY    pCMVSPORT6
	CAOZ    pCMVSPORT6
The cloning sites are SalI and NotI (polyA tail end) for both vectors.

Cluster Results:

	338 (cr_338)
		Description:		Selaginella moellendorffii v2.1.1 [blastn] (w/ end pair merging)
		Alignment Engine:	blastn
		Clustering Parameters:	96% identity, 150 bp overlap

	339 (cr_339)
		Description:		Selaginella moellendorffii v2.2.1 [malign] (w/ end pair merging)
		Alignment Engine:	malign
		Clustering Parameters:	96% identity, end-pairs always in same cluster