Selaginella BLAST Search
Choose program to use and database to search:
Note that protein models for the entire assembly are not available so blastp cannot be used. Use tblastn or tblastx as alternatives.
Program (Query vs database)
blastn (DNA vs DNA)
blastx (transl. DNA vs prot.)
tblastn (prot. vs transl. DNA)
tblastx (transl. DNA vs transl. DNA)
Database
Best - Selaginella contig 12X (11/10/06)
Selaginella contig (03/27/06)
Selaginella contig (12/28/05)
Selaginella contig 1 (05/24/05)
Selaginella DOE assembly (05/06/05)
Selaginella DOE assembled ESTs (07/18/05)
Selaginella DOE unassembled ESTs (07/18/05)
The 11/10/06 is our best assembly until the new DOE assembly is available
Perform ungapped alignment
The query sequence is
filtered for low complexity regions by default.
Enter here your input data as a sequence in FASTA format
These items are needed only for formatting:
Expect Cutoff
1e-100
1e-50
1e-25
1e-20
1e-15
1e-10
1e-5
1.0
10.0
100.0
500.0
1000.0
Descriptions
0
10
50
100
250
500
1000
Alignments
0
10
20
50
100
250
500
This search performed courtesy of the
Purdue University Computational Genomics Facility
. The BLAST 2.1.10 software used in this search was kindly provided by the
National Center for Biotechnology Information
Please contact
Michael Gribskov
with comments or questions
Send questions to
© 2005, Purdue University
